OmicsClient
This is the AWS HealthOmics API Reference. For an introduction to the service, see What is AWS HealthOmics? in the AWS HealthOmics User Guide.
Functions
Stops a multipart upload.
Accept a resource share request.
Deletes one or more read sets.
Cancels an annotation import job.
Cancels a run.
Cancels a variant import job.
Concludes a multipart upload once you have uploaded all the components.
Creates an annotation store.
Creates a new version of an annotation store.
Begins a multipart read set upload.
Creates a reference store.
You can create a run cache to save the task outputs from completed tasks in a run for a private workflow. Subsequent runs use the task outputs from the cache, rather than computing the task outputs again. You specify an Amazon S3 location where Amazon Web Services HealthOmics saves the cached data. This data must be immediately accessible (not in an archived state).
You can optionally create a run group to limit the compute resources for the runs that you add to the group.
Creates a sequence store.
Creates a cross-account shared resource. The resource owner makes an offer to share the resource with the principal subscriber (an AWS user with a different account than the resource owner).
Creates a variant store.
Creates a private workflow.Private workflows depend on a variety of resources that you create and configure before creating the workflow:
Creates a new workflow version for the workflow that you specify with the workflowId parameter.
Deletes an annotation store.
Deletes one or multiple versions of an annotation store.
Deletes a genome reference.
Deletes a genome reference store.
Deletes a workflow run.
Delete a run cache. This action removes the cache metadata stored in the service account, but doesn't delete the data in Amazon S3. You can access the cache data in Amazon S3, for inspection or to troubleshoot issues. You can remove old cache data using standard S3 Delete operations.
Deletes a workflow run group.
Deletes an access policy for the specified store.
Deletes a sequence store.
Deletes a resource share. If you are the resource owner, the subscriber will no longer have access to the shared resource. If you are the subscriber, this operation deletes your access to the share.
Deletes a variant store.
Deletes a workflow.
Deletes a workflow version. Deleting a workflow version doesn't affect any ongoing runs that are using the workflow version.
Gets information about an annotation import job.
Gets information about an annotation store.
Retrieves the metadata for an annotation store version.
Gets a file from a read set.
Gets information about a read set activation job.
Gets information about a read set export job.
Gets information about a read set import job.
Gets details about a read set.
Gets a reference file.
Gets information about a reference import job.
Gets information about a genome reference's metadata.
Gets information about a reference store.
Gets information about a workflow run.
Retrieve the details for the specified run cache.
Gets information about a workflow run group.
Gets information about a workflow run task.
Retrieves details about an access policy on a given store.
Gets information about a sequence store.
Retrieves the metadata for the specified resource share.
Gets information about a variant import job.
Gets information about a variant store.
Gets information about a workflow.
Gets information about a workflow version. For more information, see Workflow versioning in Amazon Web Services HealthOmics in the Amazon Web Services HealthOmics User Guide.
Retrieves a list of annotation import jobs.
Retrieves a list of annotation stores.
Lists the versions of an annotation store.
Lists multipart read set uploads and for in progress uploads. Once the upload is completed, a read set is created and the upload will no longer be returned in the response.
Retrieves a list of read set activation jobs.
Retrieves a list of read set export jobs.
Retrieves a list of read set import jobs.
Retrieves a list of read sets.
This operation will list all parts in a requested multipart upload for a sequence store.
Retrieves a list of reference import jobs.
Retrieves a list of references.
Retrieves a list of reference stores.
Retrieves a list of your run caches.
Retrieves a list of run groups.
Retrieves a list of runs.
Retrieves a list of tasks for a run.
Retrieves a list of sequence stores.
Retrieves the resource shares associated with an account. Use the filter parameter to retrieve a specific subset of the shares.
Retrieves a list of tags for a resource.
Retrieves a list of variant import jobs.
Retrieves a list of variant stores.
Retrieves a list of workflows.
Lists the workflow versions for the specified workflow. For more information, see Workflow versioning in Amazon Web Services HealthOmics in the Amazon Web Services HealthOmics User Guide.
Adds an access policy to the specified store.
Starts an annotation import job.
Activates an archived read set. To reduce storage charges, Amazon Omics archives unused read sets after 30 days.
Exports a read set to Amazon S3.
Starts a read set import job.
Starts a reference import job.
Starts a new run or duplicates an existing run.
Starts a variant import job.
Tags a resource.
Removes tags from a resource.
Updates an annotation store.
Updates the description of an annotation store version.
Update a run cache.
Updates a run group.
Update one or more parameters for the sequence store.
Updates a variant store.
Updates information about a workflow. For more information, see Update a private workflow in the Amazon Web Services HealthOmics User Guide.
Updates information about the workflow version. For more information, see Workflow versioning in Amazon Web Services HealthOmics in the Amazon Web Services HealthOmics User Guide.
This operation uploads a specific part of a read set. If you upload a new part using a previously used part number, the previously uploaded part will be overwritten.
Inherited functions
Stops a multipart upload.
Accept a resource share request.
Deletes one or more read sets.
Cancels an annotation import job.
Cancels a run.
Cancels a variant import job.
Concludes a multipart upload once you have uploaded all the components.
Creates an annotation store.
Creates a new version of an annotation store.
Begins a multipart read set upload.
Creates a reference store.
You can create a run cache to save the task outputs from completed tasks in a run for a private workflow. Subsequent runs use the task outputs from the cache, rather than computing the task outputs again. You specify an Amazon S3 location where Amazon Web Services HealthOmics saves the cached data. This data must be immediately accessible (not in an archived state).
You can optionally create a run group to limit the compute resources for the runs that you add to the group.
Creates a sequence store.
Creates a cross-account shared resource. The resource owner makes an offer to share the resource with the principal subscriber (an AWS user with a different account than the resource owner).
Creates a variant store.
Creates a private workflow.Private workflows depend on a variety of resources that you create and configure before creating the workflow:
Creates a new workflow version for the workflow that you specify with the workflowId parameter.
Deletes an annotation store.
Deletes one or multiple versions of an annotation store.
Deletes a genome reference.
Deletes a genome reference store.
Deletes a workflow run.
Delete a run cache. This action removes the cache metadata stored in the service account, but doesn't delete the data in Amazon S3. You can access the cache data in Amazon S3, for inspection or to troubleshoot issues. You can remove old cache data using standard S3 Delete operations.
Deletes a workflow run group.
Deletes an access policy for the specified store.
Deletes a sequence store.
Deletes a resource share. If you are the resource owner, the subscriber will no longer have access to the shared resource. If you are the subscriber, this operation deletes your access to the share.
Deletes a variant store.
Deletes a workflow.
Deletes a workflow version. Deleting a workflow version doesn't affect any ongoing runs that are using the workflow version.
Gets information about an annotation import job.
Gets information about an annotation store.
Retrieves the metadata for an annotation store version.
Gets information about a read set activation job.
Gets information about a read set export job.
Gets information about a read set import job.
Gets details about a read set.
Gets information about a reference import job.
Gets information about a genome reference's metadata.
Gets information about a reference store.
Gets information about a workflow run.
Retrieve the details for the specified run cache.
Gets information about a workflow run group.
Gets information about a workflow run task.
Retrieves details about an access policy on a given store.
Gets information about a sequence store.
Retrieves the metadata for the specified resource share.
Gets information about a variant import job.
Gets information about a variant store.
Gets information about a workflow.
Gets information about a workflow version. For more information, see Workflow versioning in Amazon Web Services HealthOmics in the Amazon Web Services HealthOmics User Guide.
Retrieves a list of annotation import jobs.
Paginate over ListAnnotationImportJobsResponse results.
Retrieves a list of annotation stores.
Paginate over ListAnnotationStoresResponse results.
Lists the versions of an annotation store.
Paginate over ListAnnotationStoreVersionsResponse results.
Lists multipart read set uploads and for in progress uploads. Once the upload is completed, a read set is created and the upload will no longer be returned in the response.
Paginate over ListMultipartReadSetUploadsResponse results.
Retrieves a list of read set activation jobs.
Paginate over ListReadSetActivationJobsResponse results.
Retrieves a list of read set export jobs.
Paginate over ListReadSetExportJobsResponse results.
Retrieves a list of read set import jobs.
Paginate over ListReadSetImportJobsResponse results.
Retrieves a list of read sets.
Paginate over ListReadSetsResponse results.
This operation will list all parts in a requested multipart upload for a sequence store.
Paginate over ListReadSetUploadPartsResponse results.
Retrieves a list of reference import jobs.
Paginate over ListReferenceImportJobsResponse results.
Retrieves a list of references.
Paginate over ListReferencesResponse results.
Retrieves a list of reference stores.
Paginate over ListReferenceStoresResponse results.
Retrieves a list of your run caches.
Paginate over ListRunCachesResponse results.
Retrieves a list of run groups.
Paginate over ListRunGroupsResponse results.
Retrieves a list of runs.
Paginate over ListRunsResponse results.
Retrieves a list of tasks for a run.
Paginate over ListRunTasksResponse results.
Retrieves a list of sequence stores.
Paginate over ListSequenceStoresResponse results.
Retrieves the resource shares associated with an account. Use the filter parameter to retrieve a specific subset of the shares.
Paginate over ListSharesResponse results.
Retrieves a list of tags for a resource.
Retrieves a list of variant import jobs.
Paginate over ListVariantImportJobsResponse results.
Retrieves a list of variant stores.
Paginate over ListVariantStoresResponse results.
Retrieves a list of workflows.
Paginate over ListWorkflowsResponse results.
Lists the workflow versions for the specified workflow. For more information, see Workflow versioning in Amazon Web Services HealthOmics in the Amazon Web Services HealthOmics User Guide.
Paginate over ListWorkflowVersionsResponse results.
Adds an access policy to the specified store.
Starts an annotation import job.
Activates an archived read set. To reduce storage charges, Amazon Omics archives unused read sets after 30 days.
Exports a read set to Amazon S3.
Starts a read set import job.
Starts a reference import job.
Starts a new run or duplicates an existing run.
Starts a variant import job.
Tags a resource.
Removes tags from a resource.
Updates an annotation store.
Updates the description of an annotation store version.
Update a run cache.
Updates a run group.
Update one or more parameters for the sequence store.
Updates a variant store.
Updates information about a workflow. For more information, see Update a private workflow in the Amazon Web Services HealthOmics User Guide.
Updates information about the workflow version. For more information, see Workflow versioning in Amazon Web Services HealthOmics in the Amazon Web Services HealthOmics User Guide.
This operation uploads a specific part of a read set. If you upload a new part using a previously used part number, the previously uploaded part will be overwritten.
Wait until an annotation import is completed
Wait until an annotation store is created
Wait until an annotation store is deleted.
Wait until an annotation store version is created
Wait until an annotation store version is deleted.
Wait until a job is completed.
Wait until a job is completed.
Wait until a job is completed.
Wait until a job is completed.
Wait until a run is completed.
Wait until a run is running.
Wait until a task is completed.
Wait until a task is running.
Wait until variant import is completed
Wait until a variant store is created
Wait until a variant store is deleted.
Wait until a workflow is active.
Wait until a workflow version is active.
Create a copy of the client with one or more configuration values overridden. This method allows the caller to perform scoped config overrides for one or more client operations.